OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4050/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    24
Turtle            22
unknown            9
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 46 5873.625000 20749.397931 0.0 67.5 573.0 2246.25 124680.0
Declaration 46 1090.375000 3344.200970 0.0 25.5 175.0 848.25 22818.0
SubClassOf 44 1412.017857 4515.587466 0.0 5.5 81.0 878.00 24611.0
ObjectPropertyDomain 41 27.410714 34.210459 0.0 0.0 19.5 29.25 133.0
ObjectPropertyRange 41 29.125000 34.900410 0.0 0.0 19.5 32.75 144.0
DataPropertyRange 35 10.714286 18.891763 0.0 0.0 1.5 10.25 97.0
SubObjectPropertyOf 35 41.321429 62.981125 0.0 0.0 12.0 55.00 284.0
InverseObjectProperties 35 10.232143 24.306371 0.0 0.0 1.5 9.00 126.0
DisjointClasses 33 237.410714 1639.093295 0.0 0.0 1.5 17.75 12277.0
DataPropertyDomain 32 9.910714 32.402175 0.0 0.0 2.0 4.25 235.0
ClassAssertion 31 120.482143 377.685920 0.0 0.0 1.0 20.25 1952.0
EquivalentClasses 29 154.607143 820.458734 0.0 0.0 1.0 61.25 6147.0
TransitiveObjectProperty 27 3.160714 5.581713 0.0 0.0 0.0 5.00 32.0
SubAnnotationPropertyOf 23 11.625000 33.936070 0.0 0.0 0.0 8.50 228.0
SubDataPropertyOf 22 5.375000 11.516885 0.0 0.0 0.0 4.75 63.0
FunctionalObjectProperty 19 2.071429 3.832194 0.0 0.0 0.0 2.25 17.0
FunctionalDataProperty 18 1.285714 3.001298 0.0 0.0 0.0 2.00 19.0
InverseFunctionalObjectProperty 17 1.339286 2.900011 0.0 0.0 0.0 1.00 12.0
SymmetricObjectProperty 15 2.142857 4.274357 0.0 0.0 0.0 1.00 16.0
AnnotationPropertyRangeOf 15 4.821429 18.491381 0.0 0.0 0.0 1.00 134.0
ObjectPropertyAssertion 15 267.321429 1390.881566 0.0 0.0 0.0 2.00 10226.0
IrrefexiveObjectProperty 14 2.250000 5.434737 0.0 0.0 0.0 0.25 22.0
AsymmetricObjectProperty 12 1.750000 4.440516 0.0 0.0 0.0 0.00 16.0
DataPropertyAssertion 10 110.696429 508.890984 0.0 0.0 0.0 0.00 3617.0
SubPropertyChainOf 9 3.214286 16.275709 0.0 0.0 0.0 0.00 120.0
DisjointUnion 9 5.017857 17.287401 0.0 0.0 0.0 0.00 116.0
DifferentIndividuals 6 0.339286 1.195093 0.0 0.0 0.0 0.00 6.0
AnnotationPropertyDomain 6 0.214286 0.867898 0.0 0.0 0.0 0.00 6.0
ReflexiveObjectProperty 6 0.107143 0.312094 0.0 0.0 0.0 0.00 1.0
EquivalentObjectProperties 6 1.142857 5.035974 0.0 0.0 0.0 0.00 36.0
DisjointObjectProperties 5 0.357143 1.406848 0.0 0.0 0.0 0.00 8.0
SameIndividual 3 0.553571 2.593135 0.0 0.0 0.0 0.00 17.0
Rule 3 0.660714 3.517627 0.0 0.0 0.0 0.00 25.0
NegativeObjectPropertyAssertion 2 0.035714 0.187256 0.0 0.0 0.0 0.00 1.0
EquivalentDataProperties 2 0.160714 0.848031 0.0 0.0 0.0 0.00 5.0
DatatypeDefinition 2 0.357143 2.540069 0.0 0.0 0.0 0.00 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 47 4908.464286 14425.679064 0.0 76.75 479.5 2579.00 78469.0
ObjectUnionOf 32 12.464286 21.085940 0.0 0.00 2.5 13.00 88.0
ObjectAllValuesFrom 29 26.017857 61.289029 0.0 0.00 1.0 27.25 400.0
ObjectSomeValuesFrom 27 410.428571 2223.309776 0.0 0.00 0.0 84.75 16614.0
ObjectIntersectionOf 25 139.571429 831.386725 0.0 0.00 0.0 17.00 6217.0
ObjectExactCardinality 24 6.428571 21.652510 0.0 0.00 0.0 3.00 115.0
DataExactCardinality 18 1.875000 3.593239 0.0 0.00 0.0 3.00 14.0
DataHasValue 15 26.642857 75.875120 0.0 0.00 0.0 3.25 494.0
DataAllValuesFrom 14 0.821429 1.789943 0.0 0.00 0.0 0.25 8.0
ObjectComplementOf 12 4.857143 24.129521 0.0 0.00 0.0 0.00 179.0
ObjectHasValue 11 8.500000 32.615111 0.0 0.00 0.0 0.00 189.0
ObjectMinCardinality 11 0.910714 2.406633 0.0 0.00 0.0 0.00 11.0
ObjectOneOf 11 13.339286 55.139584 0.0 0.00 0.0 0.00 272.0
DataSomeValuesFrom 10 0.875000 2.320364 0.0 0.00 0.0 0.00 14.0
ObjectMaxCardinality 7 16.732143 119.435413 0.0 0.00 0.0 0.00 894.0
DataMinCardinality 4 0.303571 1.877325 0.0 0.00 0.0 0.00 14.0
DataMaxCardinality 4 1.464286 8.418517 0.0 0.00 0.0 0.00 61.0
ObjectHasSelf 1 0.017857 0.133631 0.0 0.00 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.350 0.556 0.143
30 OBO 0.339 0.571 0.107
17 FOAF 0.327 0.333 0.321
19 IAO 0.300 0.600 0.000
37 PROVO 0.296 0.504 0.089
31 OEO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
13 EMMO_crystallography 0.275 0.549 0.000
8 EMMO 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
41 SEMMD 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
2 BWMD-MID 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
21 MAMBO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
32 OM 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
52 mvc 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
29 OA 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
53 opmw 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
54 periodictable 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
33 OSMO 0.189 0.378 0.000
45 SSN 0.189 0.378 0.000
55 ssos 0.155 0.311 0.000
16 EMMO_microstructure 0.000 0.000 0.000
39 QUDV 0.000 0.000 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
48 bmo 0.000 0.000 0.000
51 matinfo 0.000 0.000 0.000
28 NanoMine 0.000 0.000 0.000
9 EMMO_BVC 0.000 0.000 0.000
15 EMMO_mechanical_testing 0.000 0.000 0.000
23 MOL_TENSILE 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 56.0 0.205518 0.097901 0.0 0.2 0.2340 0.25775 0.350
score_dash 56.0 0.399125 0.186564 0.0 0.4 0.4555 0.50400 0.600
score_impact 56.0 0.011786 0.049558 0.0 0.0 0.0000 0.00000 0.321

OBO dependency graph